Package index • sdmTMBexperiments

Model and mesh comparison

compare_models(): Compare sdmTMB models
compare_meshes(): Compare survey indices across different mesh cutoff values
sdmTMB_mesh_cv(): Spatial cross-validation across mesh cutoff values

compare_surveys(): Compare individual survey indices to a compiled sdmTMB index
make_survey_prediction_region(): Build a concave-hull prediction region from survey positions
make_prediction_grid(): Build a regular prediction grid over a region

plot_mesh(): Plot an sdmTMB mesh on a map
plot_prediction_map(): Map predicted densities from an sdmTMB model
plot_random_field(): Map spatial or spatiotemporal random fields
plot_index(): Plot an sdmTMB survey index
plot_fixed_effects(): Coefficient plot of sdmTMB fixed effects
plot_variance_partitioning(): Variance partitioning of an sdmTMB model
plot_prediction_histogram(): Histograms of observed and predicted response
plot_residual_qq(): Quantile-quantile plot of sdmTMB randomized quantile residuals
bubble_map(): Bubble map of a response variable
plot(<sdmTMB_mesh_comparison>): Plot mesh comparison results
plot(<sdmTMB_mesh_cv>): Plot mesh cross-validation results
plot(<sdmTMB_model_comparison>): Plot sdmTMB model comparison results
plot(<sdmTMB_prediction_grid>): Plot a prediction grid on a map
plot(<sdmTMB_retro>): Plot retrospective indices from sdmTMB_retro
plot(<sdmTMB_survey_comparison>): Plot survey comparison results