FISKWISE / METHODS
gadget-wise
gadget3 fisheries and ecosystem models: structure, data, fitting, diagnostics, projections, and reports.
Scaffold a gadget3 model in the IMR or Icelandic folder format, compile data through BAIT, mfdb or your own files, build, fit and reweight the model, run jitter, retro and leave-out diagnostics, project reference points and catch options, and write the chapter with wise-writing.
Start with your question
Set up a gadget3 model for my stock with two sub-stocks, a commercial fleet and a survey, then fit, reweight and run the retro.
Or, in an existing project:
Explain why my gadget3 survey index includes this year's recruits, and how to fix it.
The agent reads the relevant instructions, inspects your inputs and proposes an approach. Review scientific choices, outputs and limitations; the researcher directs and remains responsible for the work.
Use it independently or with Fiskwise
For the full ecosystem, follow the installation and update guide. To use this pack alone, tell your agent:
install https://github.com/DeepWaterIMR/gadget-wise
Then describe your task. The pack retains its own setup and update instructions. R packages and system tools are installed only with the applicable permission.